There’s something irresistibly charming about muffins. They’re like a little hug for your taste buds, and when done right, they can be a delightful mix of health and indulgence. I’ve been on a quest to find the perfect balance between wholesome goodness and delightful flavor, and let me tell you—it’s entirely possible. We’ve selected 35+ healthy muffin recipes that will nourish both your body and your spirit as you head out the door for the day.
Muffins have this wonderful way of transforming any morning into something special. They’re quick to make, easy to store, and versatile enough to suit any taste. Whether you’re craving something sweet or savory, there’s a healthy muffin recipe here that’s just right for you. I’ve fallen in love with using whole grains, natural sweeteners, and fresh fruits to create muffins that are both satisfying and nutritious.
Essential Tools for Muffin Magic
To make your muffin-baking experience as smooth and enjoyable as possible, having the right tools is key. Start with a good-quality muffin tin—ideally non-stick or with a silicone coating for easy release. Investing in a set of measuring cups and spoons will ensure your ingredients are always perfectly balanced.
For mixing, a sturdy bowl and a spatula will make the process a breeze. And let’s not forget about muffin liners; they’re a game-changer for keeping your muffins intact and making clean-up a snap. If you’re a fan of texture, consider getting a cooling rack—it helps your muffins cool evenly and prevents them from getting soggy. With these tools in hand, you’ll be all set to bake up a storm of delicious, healthy muffins that make every morning feel special.
For Meal Prep
These healthy muffins are perfect for making in batches and freezing for those busy mornings when you need something quick but wholesome. Just pop one in the oven (or defrost overnight), and you’ve got a nutritious breakfast or snack ready to go. Make a batch of these muffins on Sunday and you’ll have breakfast sorted all week long
Healthy Muffin Recipes
1
avirtualvegan
Banana Oatmeal Blueberry Muffins
Easy one bowl Banana Oatmeal Blueberry Muffins made in under 30 minutes. Loaded with whole grains and fruit. They make a great breakfast or snack and freeze well too.
Check out this recipe
2
calmeats
Paleo Cardamom Carrot Muffins
Paleo Cardamom carrot muffins are grain-free, gluten and dairy-free, bursting with flavor, nutritious and sweetened only with maple syrup.
Check out this recipe
3
savvysavingcouple
Super Easy Three Ingredient Healthy Muffins Recipe
Super Easy Three Ingredient Healthy Muffins Recipe. Want a healthy, and nutrition packed breakfast idea? Check out these 3 ingredient muffins! You will LOVE them!
Check out this recipe
4
cookieandkate
Healthy Pumpkin Muffins
Easy, healthy pumpkin muffins made with whole grains, natural sweetener (maple syrup) and real pumpkin! These muffins are fluffy and delicious.
Check out this recipe
5
cookingwithcarlee
Fall Harvest Pumpkin Sourdough Muffins
There is a ton of fall flavor packed into these muffins. Apples, pumpkin, and cranberries join forces with sourdough to bring you surprisingly healthy but still deliciously tender muffins.
Check out this recipe
6
flavorthemoments
Healthy Pumpkin Muffins (Gluten-Free, Dairy-Free)
Healthy Pumpkin Muffins are soft and fluffy with the goodness of whole grain oat flour! There’s no refined sugar, they’re dairy and gluten-free, and they come together in just one bowl!
Check out this recipe
7
littlebroken
Banana Carrot Muffins
Moist and naturally sweetened, these banana carrot muffins are perfect for on-the-go healthy snacks. Packed with whole grains, maple syrup, and carrots.
Check out this recipe
8
amyshealthybaking
The Ultimate Healthy Apple Muffins | Amy’s Healthy Baking
Learn how to make the BEST healthy apple muffins! This easy recipe yields really moist bakery-style muffins. Perfect for breakfasts & snacks!
Check out this recipe
9
eatingbirdfood
Healthy Apple Muffins
These healthy apple muffins are made with whole wheat flour and sweetened with coconut sugar. They’re packed with fall flavor and extra moist thanks to pumpkin puree!
Check out this recipe
10
theroastedroot
Healthy Sweet Potato Muffins
Healthy Sweet Potato Muffins with wholesome ingredients for a gluten-free, dairy-free, refined sugar-free treat! Best way to start the day!
Check out this recipe
11
iheartvegetables
Oatmeal Pear Muffins
These tender oatmeal and pear muffins are made with bananas and whole wheat flour for a perfectly sweet, healthy muffin! Make a batch of these delicious muffins and enjoy breakfast all week long!
Check out this recipe
12
atelizabethstable
Plant-Based Fresh Fig Muffins
Plant-Based Fresh Fig Muffins are healthy treats that feature delicious fresh figs. These muffins are vegan, gluten-free and fruit-sweetened!
Check out this recipe
13
kristineskitchenblog
Healthy Cranberry Orange Muffins
These Cranberry Orange Muffins are soft and moist and bursting with cranberries in every bite! Easy to make, healthy muffin recipe!
Check out this recipe
14
thehealthyepicurean
Healthy Gingerbread Muffins
These healthy gingerbread muffins are spice-filled, tender, and delightful!
Check out this recipe
15
chocolatecoveredkatie
Healthy Corn Muffins – Whole Grain Recipe!
Homemade bakery-style healthy corn muffins that turn out incredibly soft, fluffy, and absolutely delicious!
Check out this recipe
16
christinascucina
Peach Muffins (with Yogurt and without Butter)
Peach muffins made with yogurt and without butter aren’t just a healthier recipe, this is the best & fluffiest muffin recipe you’ll ever make!
Check out this recipe
17
thenaturalnurturer
Healthy Pineapple Carrot Muffins
Healthy Pineapple Carrot Muffins are easy to make and perfectly moist! Loaded with shredded carrots, naturally sweetened with honey + fruit, and made with whole grains.
Check out this recipe
18
itsavegworldafterall
Healthy Butternut Squash Muffins (Low Sugar)
These healthy butternut squash muffins are low in sugar and great for babies, toddlers, and adults alike! Make them for breakfast or a snack.
Check out this recipe
19
acouplecooks
Healthy Blueberry Muffins
These healthy blueberry muffins are easy and wholesome, full of oats, berries, and bananas. They’re irresistibly tasty, too!
Check out this recipe
20
joyfulhealthyeats
The BEST Easy Healthy Zucchini Muffins
The BEST Healthy Zucchini Muffins you’ll ever make, naturally sweetened with maple syrup, light, moist and fluffy with hints of cinnamon and nutmeg.
Check out this recipe
21
pureandsimplenourishment
Chocolate Avocado Muffins
These are the best chocolate avocado muffins. They are fudgy, rich, chocolatey, easy to make and are gluten free, dairy free and healthy.
Check out this recipe
22
fitfoodiefinds
Healthy Chocolate Muffins
Make a double batch of these Healthy Chocolate Muffins and store some in the freezer for easy access to healthy muffins.
Check out this recipe
23
erinliveswhole
Healthy Lemon Poppy Seed Muffins
This is the best easy recipe for healthy lemon poppy seed muffins with lemon glaze. Made with gluten free oat flour, Greek yogurt, and maple syrup!
Check out this recipe
24
coffeefitkitchen
Lime and Coconut Milk Muffins
These Lime and Coconut Milk Muffins are a great combination of flavors that complement one another! They are perfect for a unique treat.
Check out this recipe
25
seekinggoodeats
Healthy Flaxseed Muffins Recipe
Delicious and moist healthy flaxseed muffins are easy and perfect for breakfast or as a snack. Gluten free, low carb, sugar free, and keto.
Check out this recipe
26
thecleaneatingcouple
Lemon Chia Seed Muffins
Healthy Lemon Chia Seed Muffins are the perfect breakfast! They’re loaded with fiber, omega-3 rich chia seeds, low in sugar and gluten free!
Check out this recipe
27
ourhappymess
Healthy Raspberry Muffins
These one bowl healthy raspberry muffins are hearty and packed with juicy raspberries, made with tangy yogurt and heart-healthy olive oil, and are refined sugar-free.
Check out this recipe
28
notenoughcinnamon
Healthy Strawberry Muffins Recipe
Moist and delicious healthy strawberry muffins, with a hint of citrus flavor. Made with oats and almond flour, they are the perfect grab-and-go breakfast.
Check out this recipe
29
healthylittlefoodies
Vegetable Savoury Muffins – Healthy Little Foodies
These vegetable savoury muffins are made with four different veggies. Easy to customise and perfect warm and butter-kissed.
Check out this recipe
30
thenaturalnurturer
Savory 3-Veggie Muffins
These Savory Vegetable Muffins are easy to make, full of healthy ingredients, and are the perfect way to get more veggies in at any meal! Great for breakfast, in lunch boxes, or as a snack or a side!
Check out this recipe
31
detoxinista
Healthy Spinach Muffins
Spinach Muffins are a delicious healthy snack that make it easier to sneak more greens into your life. They are gluten-free & kid friendly!
Check out this recipe
32
shelovesbiscotti
Healthy Orange Date Muffins
If you are looking for a tasty and nutritious start to your day, at home or on the run, this recipe for these Easy Whole Grain Orange Date Muffins is for you. Believe it or not, you could be biting into a warm orange date muffin in less than thirty minutes.
Check out this recipe
33
alphafoodie
Mediterranean Savory Muffins
These Mediterranean savory muffins with rainbow hummus frosting look as amazing as they taste. This fun recipe is a quick and healthy snack on the go.
Check out this recipe
34
sallysbakingaddiction
Healthy Bran Muffins Recipe
Made without refined sugar and positively packed with dietary fiber, these wholesome bran muffins are a tasty AND nutritious treat.
Check out this recipe
35
quantummicrogreens
Healthy Muffins with Carrots, Zucchini & Cardamom (No Sugar)
These sugar-free Healthy Cardamom Carrot-Zucchini Muffins are ideal for meal prep, serving as a convenient grab-and-go breakfast option or a satisfying snack throughout the day. Their versatility and nutrient-rich ingredients make them suitable for everyone, including kids and toddlers.
Check out this recipe
